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Tutorial:
Get sequences
Compare 2 protists
⇨
Step1. Select species
[X]
Step1. Select species:
Amoeba (11)
A. castellanii str. Neff
E. dispar SAW760
E. histolytica HM-1:IMSS-A
E. histolytica HM-1:IMSS-B
E. histolytica HM-1:IMSS
E. histolytica HM-3:IMSS
E. histolytica KU27
E. invadens IP1
E. moshkovskii Laredo
E. nuttalli P19
N. fowleri ATCC 30863
Cryptosporidium (12)
C. andersoni isolate 30847
C. hominis isolate 30976
C. hominis isolate TU502 2012
C. hominis TU502
C. hominis UdeA01
C. muris RN66
C. parvum Iowa II
C. tyzzeri isolate UGA55
C. ubiquitum isolate 39726
C. velia CCMP2878
G. niphandrodes Unknown strain
V. brassicaformis CCMP3155
Giardia (6)
G. Assemblage A2 isolate DH
G. Assemblage A isolate WB
G. Assemblage B isolate GS
G. Assemblage B isolate GS B
G. Assemblage E isolate P15
S. salmonicida ATCC50377
Microsporidia (26)
A. algerae PRA109
A. algerae PRA339
E. aedis USNM 41457
E. bieneusi H348
E. cuniculi EC1
E. cuniculi EC2
E. cuniculi EC3
E. cuniculi GB-M1
E. hellem ATCC 50504
E. hellem Swiss
E. intestinalis ATCC 50506
E. romaleae SJ-2008
M. daphniae UGP3
N. ausubeli ERTm2
N. ausubeli ERTm6
N. bombycis CQ1
N. ceranae BRL01
N. displodere strain JUm2807
N. parisii ERTm1
N. parisii ERTm3
O. colligata OC4
P. neurophilia strain MK1
S. lophii 42 110
T. hominis Unknown strain
V. corneae ATCC 50505
V. culicis subsp. floridensis
Piroplasma (8)
B. bigemina strain BOND
B. bovis T2Bo
B. microti strain RI
C. felis strain Winnie
T. annulata strain Ankara
T. equi strain WA
T. orientalis strain Shintoku
T. parva strain Muguga
Plasmodium (23)
P. berghei ANKA
P. chabaudi chabaudi
P. coatneyi Hackeri
P. cynomolgi strain B
P. cynomolgi strain M
P. falciparum IT
P. fragile strain nilgiri
P. gaboni strain SY75
P. gallinaceum 8A
P. inui San Antonio 1
P. knowlesi strain H
P. knowlesi strain Malayan Strain Pk1 A
P. malariae UG01
P. ovale curtisi GH01
P. reichenowi CDC
P. relictum SGS1-like
P. vinckei petteri strain CR
P. vinckei vinckei strain vinckei
P. vivax P01
P. vivax Sal-1
P. yoelii yoelii 17XNL
P. yoelii yoelii 17X
P. yoelii yoelii YM
Toxoplasma (26)
C. cayetanensis strain CHN HEN01
C. suis strain Wien I
E. acervulina Houghton
E. brunetti Houghton
E. falciformis Bayer Haberkorn 1970
E. maxima Weybridge
E. mitis Houghton
E. necatrix Houghton
E. praecox Houghton
E. tenella strain Houghton
H. hammondi strain H.H.34
N. caninum Liverpool
S. neurona SN3
S. neurona SO SN1
T. gondii ARI
T. gondii FOU
T. gondii GAB2-2007-GAL-DOM2
T. gondii GT1
T. gondii MAS
T. gondii ME49
T. gondii RH
T. gondii RUB
T. gondii TgCatPRC2
T. gondii VAND
T. gondii VEG
T. gondii p89
Trichomonas (1)
T. vaginalis G3
Trypanosomatidae (26)
B. ayalai B08-376
L. braziliensis MHOM/BR/75/M2904
L. donovani BPK282A1
L. infantum JPCM5
L. major strain Friedlin
L. mexicana MHOM/GT/2001/U1103
L. pyrrhocoris H10
L. seymouri ATCC 30220
L. tarentolae Parrot-TarII
T. brucei Lister strain 427
T. brucei brucei TREU927
T. brucei gambiense DAL972
T. congolense IL3000
T. cruzi CL Brener Esmeraldo-like
T. cruzi CL Brener Non-Esmeraldo-like
T. cruzi strain CL Brener
T. cruzi Dm28c
T. cruzi Sylvio X10/1-2012
T. cruzi Sylvio X10/1
T. cruzi cruzi strain Dm28c
T. cruzi marinkellei strain B7
T. evansi strain STIB 805
T. grayi ANR4
T. rangeli SC58
T. theileri isolate Edinburgh
T. vivax Y486
⇨
Step2. Applying filters
[X]
Step2. Applying filters:
2-1. Human transporter homologous:
2-2. Transmembrane domains:
[?]
The default value is: 1
0
20
2-3. Iterative functional mining:
Advanced options for 2-1:
[?]
The default values are: Identity: 30%,
qRatio and sRatio: unchecked
Identity(%):
qRatio:
sRatio:
Known transporter GOs:
[?]
The default value is: Checked
One-click potential transporters
⇨
2-3. Iterative functional mining
[X]
2-3. Iterative functional mining:
Summary Charts
Annotation Table
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